Mitchell Model, Model Mitchell, Tisdall James, James's Bioinformatics Programming Using Python PDF

By Mitchell Model, Model Mitchell, Tisdall James, James Tisdall

ISBN-10: 059615450X

ISBN-13: 9780596154509

Strong, versatile, and straightforward to take advantage of, Python is a perfect language for construction software program instruments and functions for all times technology study and improvement. This specific booklet indicates you ways to software with Python, utilizing code examples taken without delay from bioinformatics. very quickly, you may be utilizing subtle options and Python modules which are fairly powerful for bioinformatics programming. Bioinformatics Programming utilizing Python is ideal for an individual concerned with bioinformatics -- researchers, help employees, scholars, and software program builders attracted to writing bioinformatics functions. you will find it necessary even if you already use Python, write code in one other language, or haven't any programming event in any respect. it really is a great self-instruction device, in addition to a convenient reference while dealing with the demanding situations of real-life programming initiatives. familiarize yourself with Python's basics, together with how you can increase easy functions the right way to use Python modules for trend matching, established textual content processing, on-line information retrieval, and database entry detect generalized styles that hide a wide share of the way Python code is utilized in bioinformatics follow the rules and strategies of object-oriented programming enjoy the "tips and traps" part in every one bankruptcy

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Most functions accept a fixed number—possibly zero—of arguments. Some accept a fixed number of required arguments plus some number of optional arguments. We will follow the convention used in the official Python documentation, which encloses optional arguments in square brackets. Some functions can even take an arbitrary number of arguments, which is shown by the use of an ellipsis. Python has a fairly small number of “built-in” functions. [, sep=seprstr][, end=endstr]) Prints the arguments, of which there may be any number, separating each by a seprstr (default ' ') and omitting certain technical details such as the quotes surrounding a string, and ending with an endstr (default '\n') Python 2: print is a statement, not a function.

It then executes the file’s statements and creates an object to represent the module and its contents. Subsequent imports skip all of this. Python incorporates quite a few modules during its build process. While their contents are in the system, their names are not. Consider the os module just mentioned— all the contents of the module are actually already in Python, but the name os has no meaning until the module is imported. Importing assigns the name of the module to the object that represents the module’s information.

Integers can also be entered in hexadecimal notation, which uses base 16 instead of base 10. The letters A through F represent the hexadecimal digits 10 through 15. Hexadecimal notation begins with 0x. For example: 2 | Chapter 1: Primitives >>> 0x12 18 >>> 0xA40 2624 >>> 0xFF 255 # (1 x 16 )+ 2 # (10 x 16 x 16) + (4 x 16) + 0 # (15 x 16) + 15 The result of entering a hexadecimal number is still an integer—the only difference is in how you write it. Hexadecimal notation is used in a lot of computer-related contexts because each hexadecimal digit occupies one half-byte.

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Bioinformatics Programming Using Python by Mitchell Model, Model Mitchell, Tisdall James, James Tisdall


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